Sorry I missed your answer first.
That's an interesting program.
"cxCommander kill ToolsDaemon" does stop ToolsDaemon, regretably the "I'm closing now, please click me" window still pops up.
However it still has an advantage. It does not toggle (start/stop) ToolsDaemon but it always stops it, so it's a much better choice for the startup script.
Thanks Ami