If it's visible when the window is set to "Only Icons", then it must have had an icon file applied for some reason. This can happen if you change some properties in the icon information window for that icon, for example, since those properties need to be saved in the drawer's .info file. A generic icon will be created in that case so that the changes can be saved.
If you're looking at the files in Workbench, the .info files aren't shown even if the window is listing the contents in text mode. You need to use the Shell to see if there's really a .info file in there or not.
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