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Yes, FS-UAE in debugger mode is slower than normal (it check the breakpoints in step mode).
Maybe you need some more ram in the launch options.
There is no need to create an adf file to debug, the build generates an executable file that is directly loaded by fs-uae in debug mode and that is launched in a mounted hdd directory in run mode.
In your case the build process can generate the executable in the mounted dir and you can run it in the fs-uae workbench like you did before, but you will not have the debugger.
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