Hrm, You're in uncharted territory for me now. I wouldn't know where to begin trouble shooting those issues. Perhaps, in WinUAE you can run DH0:c/PFSDoctor REPAIR DH1: from a shell and see what it does?
also, I'm not sure what uaefsdb does but it gave my real amiga a lot of instability issues until I removed them with that util I mentioned earlier.
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