I think you mean user-startup instead of startup-sequence because assigns are usually installed to user-startup. On the other hand programs shouldn't need an assign to work. PROGDIR: is supported for at least 25 years and a developer can use it. Of course that doesn't help with old (dead) programs. But there exists Assign-Manager to deal with it if too much assigns fly around. Like already mentioned you can write your own startup script that sets the needed assign.
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