Genesis stores all its parameters in the AmiTCP:db directory. There is one file called general.conf IIRC. That's the place I'd look first for that delayed_ack parameter. Also I'd search Aminet for Genesis or AmiTCP docs.
Forcing the network card into half-duplex mode (rather than full-duplex) might help against transmission errors, too. Check the driver's docs on how to do this.
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