I just tried 0.82 beta and it works great(0.72- typo jim?), all the options seem to work properly now, just make sure to extract XB on a real amiga.
Also Attila, i have had some issues in previous versions with the WHDload lists not scanning/updating on my real amiga.
What you can do if you have that problem, is setup an identical x-bench install in winuae with your whdload games in the same directory structure that you would use on your amiga, scan the games there then simply copy the prefs folder(lists) back to you amiga's x-bench.
Great work Jim!!!