The virus was called "Happynewyear 96" and was a harmless link virus that adds text to the end of certain files. It will display the message "Happynewyear" at certain dates when infected files are executed. It's easily removed without causing harm, or so I've read.
This virus issue only effects Tonycrew's WB downloads. It must have added itself when he built up of one of my WB's, probably coming from one of the addons he installed.
My Classic 3.0 LITE/FULL or any other versions I've upped are 100% clean and have no viruses on them. I've fully scanned the zips before uploading each of my files.