Separate files are what i did at first but after some considerations i opted for that grouped solution as browsing through all the tiles scattered in multiple files to find the one with the right palette can really be a pain.
Note that if you're dealing with games that are bigger than 2 megabytes it may be very hard to correctly rip the tiles & sprites as there probably will be too many of them anyway.
I'll consider re-introducing the option, tho.
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