When set up normally, WinUAE tends to emulate games at roughly the same speed they originally ran on the Amiga you've chosen to emulate. So if it's a complicated 3D game or a (later) strategy game and it's being run on a A500 kind of setting, it might end up very slow. If it's a 2D action game, it really ought to run as fast as you'd expect.
But without more info (what game, what settings), it's impossible to tell what's wrong.
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