I have a Trifecta XL (thus with IDE and SCSI) as well and I was trying to format it on a Linux PC (with FS-UAE and a IDE-USB adapter). It didn't work, even though the PC was detecting the partitions properly. In the end I transferred the Trifecta drivers to the A2000 over a serial link, moved the drive back to the Amiga and ran the ICD tools. I was then able to format and use the drive. When I looked at the drive under a PC, I did indeed notice that:
- The first two sectors (a sector here being 512 bytes) contain some kind of proprietary signature.
- The disk starts at sector 2 (0-based) with the RDSK structure first, as expected, but everything from there is byte-swapped (i.e. bytes at even and odd addresses are exchanged). The "swab" option of the Unix "dd" tool can be used to convert that. I used the following Linux commands to extract the disk:
dd if=/dev/sdX skip=2 conv=swab of=disk.raw
where you have to replace /dev/sdX with the path to your device.