Ok but it'd be nice not to have multiple tools to mess with, it'd be much better to have a check box when both exporting to hfe or batch converting to hfe that gave us the option to sort the files on the target location.
That way you can make sure the firmware and menu software isn't moved as they are sensitive to being first files on the sd card.
I have both your rev c hardware and Gotek's with HxC firmware so this world be really helpful option for me.
I have the 1541u2 in my c64 and it does ask this stuff by itself, not having sort options and press "g" key to jump to first file starting with "g" has been a source of irritation.
Ps for some hw pr0n, here is my a500 with HxC rev c.